Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs72715607 chr14:102180196 G/C 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs72715608 chr14:102182688 A/G 7.18E-13 503 21.7 28.72 5.4 KM Plot
LGG rs72715610 chr14:102182762 T/C 6.22E-13 505 21.7 28.72 5.4 KM Plot
LGG rs72715612 chr14:102183270 T/C 6.08E-13 504 21.7 27.6 5.4 KM Plot
LGG rs72715613 chr14:102184133 G/C 1.19E-14 504 21.7 28.72 5.4 KM Plot
LGG rs72715618 chr14:102187633 A/G 1.09E-14 505 21.77 27.6 5.4 KM Plot
LGG rs72715620 chr14:102188713 G/A 9.44E-15 505 21.83 27.3 5.4 KM Plot
LGG rs72715623 chr14:102193210 C/T 1.21E-14 502 21.7 26.58 5.4 KM Plot
LGG rs72715628 chr14:102197332 T/A 1.12E-14 503 21.7 26.58 5.4 KM Plot
LGG rs72724200 chr9:37952144 G/A 8.12E-7 504 22.78 20.55 5.03 KM Plot
LGG rs72726021 chr9:38010435 A/G 0 509 22.67 21.98 2.47 KM Plot
LGG rs72726022 chr9:38019703 C/T 0 508 22.67 21.1 2.47 KM Plot
LGG rs72726024 chr9:38020824 G/T 0 509 22.67 21.98 2.47 KM Plot
LGG rs72726029 chr9:38032868 C/T 0 504 22.67 21.98 1.35 KM Plot
LGG rs72749734 chr1:204157901 G/A 1.84E-5 508 22.57 24.77 7.18 KM Plot